Cc:
Thanks for replying Knut.
We upgraded directly from 2.16 to 2.21. But the errors seems more database related
For example if we see drop _orgunitstructure query, it should be dropped irrespective of versions.
···
On Mon, Dec 7, 2015 at 6:24 PM, Knut Staring knutst@gmail.com wrote:
You upgraded directly? Or step by step (2.17, 2.18…)
–
Thanks,
Neeraj Gupta
On Mon, Dec 7, 2015 at 1:52 PM, Neeraj Gupta neeraj.hisp@gmail.com wrote:
Dear All,
We recently upgraded DHIS 2.16 to 2.21 where database is Mysql some of the errors are listed below, can someone please guide us?(We are using aggregated data not tracker)
Error1:
In mysql *programrule *table is not created automatically. While starting getting the below error:
- ERROR 2015-12-07 17:36:56,864 Problem updating: programrule, id column: programruleid (IdentityPopulator.java [localho
st-startStop-1])
org.springframework.jdbc.BadSqlGrammarException: StatementCallback; bad SQL grammar [SELECT * from programrule WHERE uid
IS NULL]; nested exception is com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table ‘dhis.programrule’
doesn’t exist
at org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans
lator.java:231)
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio
nTranslator.java:73)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:471)
at org.springframework.jdbc.core.JdbcTemplate.queryForRowSet(JdbcTemplate.java:526)
at org.hisp.dhis.common.IdentityPopulator.execute(IdentityPopulator.java:86)
at org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:117)
at org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:86)
at org.hisp.dhis.system.startup.StartupListener.contextInitialized(StartupListener.java:71)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4729)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5167)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:725)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:701)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:945)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1768)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table ‘dhis.programrule’ doesn’t exist
at sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:377)
at com.mysql.jdbc.Util.getInstance(Util.java:360)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484)
at com.mysql.jdbc.StatementImpl.executeQuery(StatementImpl.java:1446)
at com.mchange.v2.c3p0.impl.NewProxyStatement.executeQuery(NewProxyStatement.java:35)
at org.springframework.jdbc.core.JdbcTemplate$1QueryStatementCallback.doInStatement(JdbcTemplate.java:455)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405)
… 19 more
- INFO 2015-12-07 17:36:57,144 Executing startup routine [6 of 13, runlevel 5]: TableCreator (DefaultStartupRoutineExec
utor.java [localhost-startStop-1])
Error2: While generating resource tables got the below error, think the query should be DROP TABLE IF EXISTS _orgunitstructure; Same applies for all resource tables.
- INFO 2015-12-07 17:41:06,417 [Level: INFO, category: RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messag
e: Generating resource tables] (InMemoryNotifier.java [taskScheduler-1])
- INFO 2015-12-07 17:41:06,465 Create table SQL: create table _orgunitstructure_temp (organisationunitid integer not nu
ll primary key, organisationunituid character(11), level integer,
idlevel1integer,uidlevel1character(11), `idleve
l2
integer,uidlevel2character(11),idlevel3integer,uidlevel3` character(11)); (JdbcResourceTableStore.java [ta
skScheduler-1])
- INFO 2015-12-07 17:41:06,495 Populate table content rows: 203 (JdbcResourceTableStore.java [taskScheduler-1])
- INFO 2015-12-07 17:41:06,546 Create index SQL: create unique index in_orgunitstructure_organisationunituid_VWU2G on _
orgunitstructure_temp(organisationunituid) (JdbcResourceTableStore.java [taskScheduler-1])
- INFO 2015-12-07 17:41:06,582 [Level: ERROR, category: RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messa
ge: Process failed: StatementCallback; bad SQL grammar [drop table _orgunitstructure;]; nested exception is com.mysql.jd
bc.exceptions.jdbc4.MySQLSyntaxErrorException: Unknown table ‘dhis._orgunitstructure’] (InMemoryNotifier.java [tas
kScheduler-1])
Error3: Tried to copy resource table structures from old db and tried generate resource table option, this time got the below error:
- INFO 2015-12-07 18:05:19,296 [Level: ERROR, category: RESOURCETABLE_UPDATE, time: Mon Dec 07 18:05:19 IST 2015, messa
ge: Process failed: StatementCallback; bad SQL grammar [create unique index in_dataelementstructure_dataelementuid_M86c6
on _dataelementstructure_temp(dataelementuid);create index in_dataelementstructure_datasetid_fVMFF on _dataelementstruc
ture_temp(datasetid);create index in_dataelementstructure_datasetuid_nsdEu on _dataelementstructure_temp(datasetuid);cre
ate index in_dataelementstructure_periodtypeid_EkjZg on _dataelementstructure_temp(periodtypeid);]; nested exception is
com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the manual that c
orresponds to your MySQL server version for the right syntax to use near 'create index in_dataelementstructure_datasetid
_fVMFF on _dataelementstructure_te’ at line 1] (InMemoryNotifier.java [taskScheduler-5])
- ERROR 2015-12-07 18:05:19,319 Unexpected error occurred in scheduled task. (TaskUtils.java [taskScheduler-5])
org.springframework.jdbc.BadSqlGrammarException: StatementCallback; bad SQL grammar [create unique index in_dataelements
tructure_dataelementuid_M86c6 on _dataelementstructure_temp(dataelementuid);create index in_dataelementstructure_dataset
id_fVMFF on _dataelementstructure_temp(datasetid);create index in_dataelementstructure_datasetuid_nsdEu on _dataelements
tructure_temp(datasetuid);create index in_dataelementstructure_periodtypeid_EkjZg on _dataelementstructure_temp(periodty
peid);]; nested exception is com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL sy
ntax; check the manual that corresponds to your MySQL server version for the right syntax to use near 'create index in_d
ataelementstructure_datasetid_fVMFF on _dataelementstructure_te’ at line 1
at org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans
lator.java:231)
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio
nTranslator.java:73)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:440)
at org.hisp.dhis.resourcetable.jdbc.JdbcResourceTableStore.generateResourceTable(JdbcResourceTableStore.java:118
)
at org.hisp.dhis.resourcetable.DefaultResourceTableService.generateDataElementTable(DefaultResourceTableService.
java:198)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterce
ptor.java:99)
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspec
tSupport.java:281)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
at com.sun.proxy.$Proxy143.generateDataElementTable(Unknown Source)
at org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.generateAll(ResourceTableTask.java:121)
at org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.run(ResourceTableTask.java:84)
at org.springframework.scheduling.support.DelegatingErrorHandlingRunnable.run(DelegatingErrorHandlingRunnable.ja
va:54)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(Unknown Source)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the ma
nual that corresponds to your MySQL server version for the right syntax to use near 'create index in_dataelementstructur
e_datasetid_fVMFF on _dataelementstructure_te’ at line 1
at sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:377)
at com.mysql.jdbc.Util.getInstance(Util.java:360)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484)
at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:848)
at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:742)
at com.mchange.v2.c3p0.impl.NewProxyStatement.execute(NewProxyStatement.java:1006)
at org.springframework.jdbc.core.JdbcTemplate$1ExecuteStatementCallback.doInStatement(JdbcTemplate.java:432)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405)
… 26 more
Thanks,
Neeraj Gupta
–
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Knut Staring
Dept. of Informatics, University of Oslo
Norway: +4791880522
Skype: knutstar
–