Hey there @LCaynar!
Making changes to user authorities and program metadata, you would have to log out and in with the user in question. Also, you should open the cache cleaner app and clean the cache so that you are looking at the latest version of all your program configurations when you log in.
From the opening remark I understood that you where on DHIS2 version 2.25 - but I assume from the screenshots that you are using DHIS2 version 2.29 or later. Please check which version of DHIS2 you are suing by clicking the “About DHIS2” option of the profile menu in the top right of the screen when logged in.
If you are on 2.29 or later you need to share the program and program stages with the user groups that is going to have access, and your user needs to be member of the group that the program and program stage is shared with. You can read about data sharing levels here: Home - DHIS2 Documentation