Data integrity check with troubles

When I run data integrity check on my database I get this on the logs and on the browser it shows that interesting message: “Please wait while the system is processing…”.

I waited for more that a hour!!! And nothing.

My DHIS is 2.0.5 the beta from the last week. Yes I am on MySQL.

···

=======================

org.hibernate.InstantiationException: Cannot instantiate abstract class or interface: org.hisp.dhis.source.Source

at org.hibernate.tuple.PojoInstantiator.instantiate(PojoInstantiator.java:101)

at org.hibernate.tuple.PojoInstantiator.instantiate(PojoInstantiator.java:123)

at org.hibernate.tuple.entity.AbstractEntityTuplizer.instantiate(AbstractEntityTuplizer.java:606)

at org.hibernate.persister.entity.AbstractEntityPersister.instantiate(AbstractEntityPersister.java:3888)

at org.hibernate.impl.SessionImpl.instantiate(SessionImpl.java:1412)

at org.hibernate.impl.SessionImpl.instantiate(SessionImpl.java:1401)

at org.hibernate.loader.Loader.instanceNotYetLoaded(Loader.java:1342)

at org.hibernate.loader.Loader.getRow(Loader.java:1251)

at org.hibernate.loader.Loader.getRowFromResultSet(Loader.java:619)

at org.hibernate.loader.Loader.doQuery(Loader.java:745)

at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:270)

at org.hibernate.loader.Loader.doList(Loader.java:2294)

at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2172)

at org.hibernate.loader.Loader.list(Loader.java:2167)

at org.hibernate.loader.criteria.CriteriaLoader.list(CriteriaLoader.java:119)

at org.hibernate.impl.SessionImpl.list(SessionImpl.java:1706)

at org.hibernate.impl.CriteriaImpl.list(CriteriaImpl.java:347)

at org.hisp.dhis.source.hibernate.HibernateSourceStore.getAllSources(HibernateSourceStore.java:98)

at org.hisp.dhis.organisationunit.DefaultOrganisationUnitService.getAllOrganisationUnits(DefaultOrganisationUnitService.java:164)

at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:616)

at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:309)

at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)

at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)

at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)

at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:89)

at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)

at $Proxy92.getAllOrganisationUnits(Unknown Source)

at org.hisp.dhis.dataintegrity.DefaultDataIntegrityService.getOrganisationUnitsWithCyclicReferences(DefaultDataIntegrityService.java:365)

at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:616)

at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:309)

at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)

at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)

at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)

at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:89)

at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)

at $Proxy124.getOrganisationUnitsWithCyclicReferences(Unknown Source)

at org.hisp.dhis.dataadmin.action.dataintegrity.GetDataIntegrityAction.execute(GetDataIntegrityAction.java:248)

at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:616)

at com.opensymphony.xwork2.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:441)

at com.opensymphony.xwork2.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:280)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:243)

at org.hisp.dhis.webportal.interceptor.XWorkPortalUserInterceptor.intercept(XWorkPortalUserInterceptor.java:82)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)

at org.hisp.dhis.webportal.interceptor.XWorkPortalModuleInterceptor.intercept(XWorkPortalModuleInterceptor.java:85)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)

at org.hisp.dhis.webportal.interceptor.XWorkPortalMenuInterceptor.intercept(XWorkPortalMenuInterceptor.java:91)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)

at org.hisp.dhis.webportal.interceptor.XWorkPortalParamsInterceptor.intercept(XWorkPortalParamsInterceptor.java:117)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)

at org.hisp.dhis.interceptor.StyleInterceptor.intercept(StyleInterceptor.java:89)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)

at org.hisp.dhis.interceptor.SystemSettingInterceptor.intercept(SystemSettingInterceptor.java:103)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)

at org.hisp.dhis.interceptor.DataDictionaryModeInterceptor.intercept(DataDictionaryModeInterceptor.java:109)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)

at org.hisp.dhis.interceptor.DisplayPropertyInterceptor.intercept(DisplayPropertyInterceptor.java:90)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)

at org.hisp.dhis.interceptor.SortOrderInterceptor.intercept(SortOrderInterceptor.java:124)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)

at org.hisp.dhis.security.intercept.XWorkSecurityInterceptor.intercept(XWorkSecurityInterceptor.java:98)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)

at org.hisp.dhis.interceptor.I18nInterceptor.intercept(I18nInterceptor.java:141)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)

at com.opensymphony.xwork2.interceptor.ChainingInterceptor.intercept(ChainingInterceptor.java:126)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)

at com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:195)

at com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:87)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)

at com.opensymphony.xwork2.interceptor.StaticParametersInterceptor.intercept(StaticParametersInterceptor.java:179)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)

at org.hisp.dhis.interceptor.ExceptionInterceptor.intercept(ExceptionInterceptor.java:89)

at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)

at org.apache.struts2.impl.StrutsActionProxy.execute(StrutsActionProxy.java:52)

at org.apache.struts2.dispatcher.Dispatcher.serviceAction(Dispatcher.java:488)

at org.apache.struts2.dispatcher.FilterDispatcher.doFilter(FilterDispatcher.java:395)

at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)

at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)

at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:343)

at org.hisp.dhis.security.filter.RequiredLoginFilter.doFilter(RequiredLoginFilter.java:129)

at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)

at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilter(BasicAuthenticationFilter.java:177)

at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)

at org.hisp.dhis.security.filter.AutomaticAccessFilter.doFilter(AutomaticAccessFilter.java:112)

at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)

at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:105)

at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)

at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:188)

at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)

at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:79)

at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)

at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:149)

at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)

at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)

at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)

at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)

at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198)

at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)

at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)

at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)

at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)

at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)

at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:128)

at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)

at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)

at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:286)

at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:845)

at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:583)

at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:447)

at java.lang.Thread.run(Thread.java:636)

=====================

Caveman

Hi Orvalho,

I think you should check whether you have exactly the same IDs in both
the source and organisationunit tables. Any discrepancy here is likely
to result in that kind of error.

Knut

···

On Tue, Aug 31, 2010 at 11:06 PM, Orvalho Augusto <orvaquim@gmail.com> wrote:

When I run data integrity check on my database I get this on the logs and on
the browser it shows that interesting message: "Please wait while the system
is processing...".
I waited for more that a hour!!! And nothing.
My DHIS is 2.0.5 the beta from the last week. Yes I am on MySQL.

org.hibernate.InstantiationException: Cannot instantiate abstract class or
interface: org.hisp.dhis.source.Source
at
org.hibernate.tuple.PojoInstantiator.instantiate(PojoInstantiator.java:101)
at
org.hibernate.tuple.PojoInstantiator.instantiate(PojoInstantiator.java:123)
at
org.hibernate.tuple.entity.AbstractEntityTuplizer.instantiate(AbstractEntityTuplizer.java:606)
at
org.hibernate.persister.entity.AbstractEntityPersister.instantiate(AbstractEntityPersister.java:3888)
at org.hibernate.impl.SessionImpl.instantiate(SessionImpl.java:1412)
at org.hibernate.impl.SessionImpl.instantiate(SessionImpl.java:1401)
at org.hibernate.loader.Loader.instanceNotYetLoaded(Loader.java:1342)
at org.hibernate.loader.Loader.getRow(Loader.java:1251)
at org.hibernate.loader.Loader.getRowFromResultSet(Loader.java:619)
at org.hibernate.loader.Loader.doQuery(Loader.java:745)
at
org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:270)
at org.hibernate.loader.Loader.doList(Loader.java:2294)
at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2172)
at org.hibernate.loader.Loader.list(Loader.java:2167)
at
org.hibernate.loader.criteria.CriteriaLoader.list(CriteriaLoader.java:119)
at org.hibernate.impl.SessionImpl.list(SessionImpl.java:1706)
at org.hibernate.impl.CriteriaImpl.list(CriteriaImpl.java:347)
at
org.hisp.dhis.source.hibernate.HibernateSourceStore.getAllSources(HibernateSourceStore.java:98)
at
org.hisp.dhis.organisationunit.DefaultOrganisationUnitService.getAllOrganisationUnits(DefaultOrganisationUnitService.java:164)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:309)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at
org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:89)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy92.getAllOrganisationUnits(Unknown Source)
at
org.hisp.dhis.dataintegrity.DefaultDataIntegrityService.getOrganisationUnitsWithCyclicReferences(DefaultDataIntegrityService.java:365)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:309)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at
org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:89)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy124.getOrganisationUnitsWithCyclicReferences(Unknown Source)
at
org.hisp.dhis.dataadmin.action.dataintegrity.GetDataIntegrityAction.execute(GetDataIntegrityAction.java:248)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at
com.opensymphony.xwork2.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:441)
at
com.opensymphony.xwork2.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:280)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:243)
at
org.hisp.dhis.webportal.interceptor.XWorkPortalUserInterceptor.intercept(XWorkPortalUserInterceptor.java:82)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.webportal.interceptor.XWorkPortalModuleInterceptor.intercept(XWorkPortalModuleInterceptor.java:85)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.webportal.interceptor.XWorkPortalMenuInterceptor.intercept(XWorkPortalMenuInterceptor.java:91)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.webportal.interceptor.XWorkPortalParamsInterceptor.intercept(XWorkPortalParamsInterceptor.java:117)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.interceptor.StyleInterceptor.intercept(StyleInterceptor.java:89)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.interceptor.SystemSettingInterceptor.intercept(SystemSettingInterceptor.java:103)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.interceptor.DataDictionaryModeInterceptor.intercept(DataDictionaryModeInterceptor.java:109)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.interceptor.DisplayPropertyInterceptor.intercept(DisplayPropertyInterceptor.java:90)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.interceptor.SortOrderInterceptor.intercept(SortOrderInterceptor.java:124)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.security.intercept.XWorkSecurityInterceptor.intercept(XWorkSecurityInterceptor.java:98)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.interceptor.I18nInterceptor.intercept(I18nInterceptor.java:141)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
com.opensymphony.xwork2.interceptor.ChainingInterceptor.intercept(ChainingInterceptor.java:126)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:195)
at
com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:87)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
com.opensymphony.xwork2.interceptor.StaticParametersInterceptor.intercept(StaticParametersInterceptor.java:179)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.interceptor.ExceptionInterceptor.intercept(ExceptionInterceptor.java:89)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.apache.struts2.impl.StrutsActionProxy.execute(StrutsActionProxy.java:52)
at
org.apache.struts2.dispatcher.Dispatcher.serviceAction(Dispatcher.java:488)
at
org.apache.struts2.dispatcher.FilterDispatcher.doFilter(FilterDispatcher.java:395)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:343)
at
org.hisp.dhis.security.filter.RequiredLoginFilter.doFilter(RequiredLoginFilter.java:129)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
at
org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilter(BasicAuthenticationFilter.java:177)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
at
org.hisp.dhis.security.filter.AutomaticAccessFilter.doFilter(AutomaticAccessFilter.java:112)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
at
org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:105)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
at
org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:188)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
at
org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:79)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
at
org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:149)
at
org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
at
org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at
org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198)
at
org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:128)
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:286)
at
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:845)
at
org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:583)
at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:447)
at java.lang.Thread.run(Thread.java:636)

Caveman

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--
Cheers,
Knut Staring

In other words, both of the following queries should yield no results:

SELECT organisationunitid
FROM source RIGHT JOIN organisationunit ON sourceid = organisationunitid
WHERE sourceid is null

SELECT sourceid
FROM organisationunit RIGHT JOIN source ON sourceid = organisationunitid
WHERE organisationunitid is null

···

On Wed, Sep 1, 2010 at 12:26 AM, Knut Staring <knutst@gmail.com> wrote:

Hi Orvalho,

I think you should check whether you have exactly the same IDs in both
the source and organisationunit tables. Any discrepancy here is likely
to result in that kind of error.

Knut

On Tue, Aug 31, 2010 at 11:06 PM, Orvalho Augusto <orvaquim@gmail.com> wrote:

When I run data integrity check on my database I get this on the logs and on
the browser it shows that interesting message: "Please wait while the system
is processing...".
I waited for more that a hour!!! And nothing.
My DHIS is 2.0.5 the beta from the last week. Yes I am on MySQL.

org.hibernate.InstantiationException: Cannot instantiate abstract class or
interface: org.hisp.dhis.source.Source
at
org.hibernate.tuple.PojoInstantiator.instantiate(PojoInstantiator.java:101)
at
org.hibernate.tuple.PojoInstantiator.instantiate(PojoInstantiator.java:123)
at
org.hibernate.tuple.entity.AbstractEntityTuplizer.instantiate(AbstractEntityTuplizer.java:606)
at
org.hibernate.persister.entity.AbstractEntityPersister.instantiate(AbstractEntityPersister.java:3888)
at org.hibernate.impl.SessionImpl.instantiate(SessionImpl.java:1412)
at org.hibernate.impl.SessionImpl.instantiate(SessionImpl.java:1401)
at org.hibernate.loader.Loader.instanceNotYetLoaded(Loader.java:1342)
at org.hibernate.loader.Loader.getRow(Loader.java:1251)
at org.hibernate.loader.Loader.getRowFromResultSet(Loader.java:619)
at org.hibernate.loader.Loader.doQuery(Loader.java:745)
at
org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:270)
at org.hibernate.loader.Loader.doList(Loader.java:2294)
at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2172)
at org.hibernate.loader.Loader.list(Loader.java:2167)
at
org.hibernate.loader.criteria.CriteriaLoader.list(CriteriaLoader.java:119)
at org.hibernate.impl.SessionImpl.list(SessionImpl.java:1706)
at org.hibernate.impl.CriteriaImpl.list(CriteriaImpl.java:347)
at
org.hisp.dhis.source.hibernate.HibernateSourceStore.getAllSources(HibernateSourceStore.java:98)
at
org.hisp.dhis.organisationunit.DefaultOrganisationUnitService.getAllOrganisationUnits(DefaultOrganisationUnitService.java:164)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:309)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at
org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:89)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy92.getAllOrganisationUnits(Unknown Source)
at
org.hisp.dhis.dataintegrity.DefaultDataIntegrityService.getOrganisationUnitsWithCyclicReferences(DefaultDataIntegrityService.java:365)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:309)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at
org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:89)
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy124.getOrganisationUnitsWithCyclicReferences(Unknown Source)
at
org.hisp.dhis.dataadmin.action.dataintegrity.GetDataIntegrityAction.execute(GetDataIntegrityAction.java:248)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at
com.opensymphony.xwork2.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:441)
at
com.opensymphony.xwork2.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:280)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:243)
at
org.hisp.dhis.webportal.interceptor.XWorkPortalUserInterceptor.intercept(XWorkPortalUserInterceptor.java:82)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.webportal.interceptor.XWorkPortalModuleInterceptor.intercept(XWorkPortalModuleInterceptor.java:85)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.webportal.interceptor.XWorkPortalMenuInterceptor.intercept(XWorkPortalMenuInterceptor.java:91)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.webportal.interceptor.XWorkPortalParamsInterceptor.intercept(XWorkPortalParamsInterceptor.java:117)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.interceptor.StyleInterceptor.intercept(StyleInterceptor.java:89)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.interceptor.SystemSettingInterceptor.intercept(SystemSettingInterceptor.java:103)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.interceptor.DataDictionaryModeInterceptor.intercept(DataDictionaryModeInterceptor.java:109)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.interceptor.DisplayPropertyInterceptor.intercept(DisplayPropertyInterceptor.java:90)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.interceptor.SortOrderInterceptor.intercept(SortOrderInterceptor.java:124)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.security.intercept.XWorkSecurityInterceptor.intercept(XWorkSecurityInterceptor.java:98)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.interceptor.I18nInterceptor.intercept(I18nInterceptor.java:141)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
com.opensymphony.xwork2.interceptor.ChainingInterceptor.intercept(ChainingInterceptor.java:126)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:195)
at
com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:87)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
com.opensymphony.xwork2.interceptor.StaticParametersInterceptor.intercept(StaticParametersInterceptor.java:179)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.hisp.dhis.interceptor.ExceptionInterceptor.intercept(ExceptionInterceptor.java:89)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:237)
at
org.apache.struts2.impl.StrutsActionProxy.execute(StrutsActionProxy.java:52)
at
org.apache.struts2.dispatcher.Dispatcher.serviceAction(Dispatcher.java:488)
at
org.apache.struts2.dispatcher.FilterDispatcher.doFilter(FilterDispatcher.java:395)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:343)
at
org.hisp.dhis.security.filter.RequiredLoginFilter.doFilter(RequiredLoginFilter.java:129)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
at
org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilter(BasicAuthenticationFilter.java:177)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
at
org.hisp.dhis.security.filter.AutomaticAccessFilter.doFilter(AutomaticAccessFilter.java:112)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
at
org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:105)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
at
org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:188)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
at
org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:79)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
at
org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:149)
at
org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
at
org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at
org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198)
at
org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:128)
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:286)
at
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:845)
at
org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:583)
at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:447)
at java.lang.Thread.run(Thread.java:636)

Caveman

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--
Cheers,
Knut Staring

--
Cheers,
Knut Staring